1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacaatttaacactagttctcgctactaataatccttacatctgcataggattttgtgataaattagatttgtttattgccacagGAAGCTATATCGGTACCATGGAAACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAG
species | Arabidopsis thaliana |
transcript | AT4G24940.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAG GAAGCTATATCGGTACCATGGAAACCGATTCCTCGGAGAACAGCAAAGCTCEST: gi|124944147|gb|EL020279.1|EL020279
genomic: AAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAGgtacaattta ... attgccacagGAAGCTATATCGGTACCATGGAAACCGATTCCTCGGAGAACAGCAAAGCTC
EST: AAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAG GAAGCTATATCGGTACCATGGAAACCGAT
genomic: AAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAGgtacaattta ... attgccacagGAAGCTATATCGGTACCATGGAAACCGAT
aatccttacatctgcataggattttgtgataaattagatttgtttattgccacagGAAGCTATATCGGTACCATGGAAACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAG
tccttac putative branch site (score: 2)
attttgtgataaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatttaacactagttctcgctactaataatccttacatctgcataggattttgtgataaattagatttgtttattgccacagGAAGCTATATCGGTACCATGGAAACCGATTCCTCGGAGAACAGCAAAGCTCTACTTTGCTATGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG