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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttataccaccttttacatatttaccacttgctttcatctttagttgctccatacatctcttcatgacgttgtctgtttattttttgcagAAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTATACAGTCGATTGTAGAGACTCATGTGGTGAAATCTTTGTGGACCTCCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G24940.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164018084|gb|ES010293.1|ES010293
EST:     GAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAA                         AAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTAT
genomic: GAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAgtatttatac ... ttttttgcagAAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTAT
EST: gi|164116070|gb|ES052879.1|ES052879
EST:     GAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAA                         AAATATGTCAATGAAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTA
genomic: GAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAgtatttatac ... ttttttgcagAAATATGTCAATGAAAAA-TGTCGGAAGTTAAAGAAACGTGTCGCATTCTA
EST: gi|163967715|gb|ES054776.1|ES054776
EST:     CTCGTGTTACCAAA                         AAATATGTCAATG-AAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTAT
genomic: CTCGTGCTACCAAAgtatttatac ... ttttttgcagAAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctttagttgctccatacatctcttcatgacgttgtctgtttattttttgcagAAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTATACAGTCGATTGTAGAGACTCATGTGGTGAAATCTTTGTGGACCTCCAAG
                                     tctgtttatttttt  CT-rich tract
                                     tctgtttatttttt  TA-rich tract