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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCTGATGAAAATGTTTACAGTGGCAAAACTGTGGCTGAGATTTGTAGTGATTCACTCAAGGATTTCAACCCTATGGTCCGTGTTTCCGTAGAGAAAGgtttccctctaatacctctccgttaatgttttaaaaacataccgactattatctgatcaatttttcaaatctttcag

Basic information

species Arabidopsis thaliana
transcript AT4G24940.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24940.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G01440.2 (Glycine max), 5'ss of exon 3
CCGCCTGATGAAAATGTTTACAGTGGCAAAACTGTGGCTGAGATTTGTAGTGATTCACTCAAGGATTTCAACCCTATGGTCCGTGTTTCCGTAGAGAAAGgtttccctctaatacctctccgttaatgttttaaaaacataccg----actattatctgatcaatttt----tcaaatctttcag--------------------------------
|| |||||||| ||||  || ||||| || ||  | | |||| ||||| || ||||||| || || |||||||||||||| ||||||||| | |||||||||||   | |   || | | |  | || | |        | |      | |  | ||   |   | ||    | |  | ||   |                                
CCTCCTGATGAGAATGCGTATAGTGGAAAGACCCTTGGTGAGCTTTGTTGTAATTCACTTAAAGACTTCAACCCTATGGTTCGTGTTTCCATTGAGAAAGgtttttgttttgaacttgttcccttatttgtctggtttctgcttctgcattgctttcacgtggttcttgacattatgttttgtggttggtcttttctgttgttcgtctttgcttcag