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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCGGAAGTTAAAGAAACGTGTCGCATTCTATACAGTCGATTGTAGAGACTCATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAGgtacttgcatgatttgttgttgcatttcttctgttgattatgtgctgttttgacatttcatctggcttatttttaaatttctataattccattgaacatttaaacttcattaacaacttctaatttgcacaatgtcctttgtattgttttcctgataattttctttccacag

Basic information

species Arabidopsis thaliana
transcript AT4G24940.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078264|gb|DR374021.1|DR374021
EST:     GTGAAATCTTTGT-GACCTCCAAGATTACAAGTACACAAAG                         AAAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAG
genomic: GTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAGgtacttgcat ... ctttccacagAAAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAG
EST: gi|164041847|gb|ES147159.1|ES147159
EST:     ACTCATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAG                         AAGACGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAG
genomic: ACTCATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAGgtacttgcat ... ctttccacagAAAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAG
EST: gi|124944147|gb|EL020279.1|EL020279
EST:     TCTTTGTGGACCTCCAAGATTACAAGTACACAAAG                         AAAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAG
genomic: TCTTTGTGGACCTCCAAGATTACAAGTACACAAAGgtacttgcat ... ctttccacagAAAAAGCTTGAAGAGATGGTGGAATGCGAACTAAATTTTCCAAGTTTTCAG
EST: gi|124860793|gb|EH945230.1|EH945230
EST:     ACTCATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAG                         AAAAAGCTTGAAGAGATGGTGGAATGCGAACTAAA
genomic: ACTCATGTGGTGAAATCTTTGTGGACCTCCAAGATTACAAGTACACAAAGgtacttgcat ... ctttccacagAAAAAGCTTGAAGAGATGGTGGAATGCGAACTAAA