1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGATTTGTCAATGCTTGGCACTGATTTTTTTGAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAgtatttataccaccttttacatatttaccacttgctttcatctttagttgctccatacatctcttcatgacgttgtctgtttattttttgcag
species | Arabidopsis thaliana |
transcript | AT4G24940.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAA AAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTATEST: gi|164116070|gb|ES052879.1|ES052879
genomic: GAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAgtatttatac ... ttttttgcagAAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTAT
EST: GAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAA AAATATGTCAATGAAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTAEST: gi|163967715|gb|ES054776.1|ES054776
genomic: GAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAgtatttatac ... ttttttgcagAAATATGTCAATGAAAAA-TGTCGGAAGTTAAAGAAACGTGTCGCATTCTA
EST: CTCGTGTTACCAAA AAATATGTCAATG-AAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTAT
genomic: CTCGTGCTACCAAAgtatttatac ... ttttttgcagAAATATGTCAATGAAAAATGTCGGAAGTTAAAGAAACGTGTCGCATTCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTTGTCAATGCTTGGCACTGATTTTTTTGAGCAGTTTGATGTCGTAGTTATAGGCTATGGTTCTCGTGCTACCAAAgtatttataccaccttttacatatttaccacttgctttcatctttagttgctccatacatctcttcatgacgttgtctgtttattttttgcag
- - - - - - - - - - - - - - - - GAGCAG