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gtaagcacttcacttgattgaattaatcctttcgctttttgagacctctaaagcttaattactgatgtgtctgtcatctgcagACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAG
species | Arabidopsis thaliana |
transcript | AT4G17050.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATCCAT ACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTEST: gi|164054788|gb|ES112215.1|ES112215
genomic: AACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATCCATgtaagcactt ... tcatctgcagACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGT
EST: TCCGATGTCCGTTGCTTATGAC-TCAACATCCAT ACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAGGAAGTTCAEST: gi|124810172|gb|EH895348.1|EH895348
genomic: TCCGATGTCCGTTGCTTATGACTTCAACATCCATgtaagcactt ... tcatctgcagACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAGGAAGTTCA
EST: AACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATCCAT ACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAGGEST: gi|86084005|gb|DR379764.1|DR379764
genomic: AACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATCCATgtaagcactt ... tcatctgcagACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAGG
EST: AACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATCCAT ATTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAG
genomic: AACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATCCATgtaagcactt ... tcatctgcagACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAG
ctttcgctttttgagacctctaaagcttaattactgatgtgtctgtcatctgcagACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAG
tactgat putative branch site (score: 2)
ttaattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacttcacttgattgaattaatcctttcgctttttgagacctctaaagcttaattactgatgtgtctgtcatctgcagACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA