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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagactgttgtcacacaacatgaaaaattctactctcttccatgaaagttttgcaagaatacaactttctattggaactgtgcattgattttacctgaagatttattcgaccacacaatctcagatactgtcgttgtttcagGTATGCTGCACTCGGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGTGAATCGAAATCCATTGTGATCAAAGATTGATATGACTTTGCAGTAAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G17050.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084005|gb|DR379764.1|DR379764
EST:     CCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATG                         GTATGCTGCACTCGGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGT
genomic: CCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATGgtaagagact ... gttgtttcagGTATGCTGCACTCGGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGT
EST: gi|124902512|gb|EH976592.1|EH976592
EST:     AGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATG                         GTATGCTGCACTCGGAAAGACTAGGTCTCGGTATTTGTTGTACAAAG
genomic: AGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATGgtaagagact ... gttgtttcagGTATGCTGCACTCGGAAAGACTAGGTCTCGGTATTTGTTGTACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttacctgaagatttattcgaccacacaatctcagatactgtcgttgtttcagGTATGCTGCACTCGGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGTGAATCGAAATCCATTGTGATCAAAGATTGATATGACTTTGCAGTAAAAG
 cattgat  putative branch site (score: 4)
                                              ttgtttc  putative PPT
          aagatttatt  TA-rich tract