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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattacttatatgagctctatctttaacatatgcttgcacttatgatctataatctgctttttaactcctttcaatattctgaatctttttcaagTCTTATATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGTTCTTCAAAAAAATTGACG

Basic information

species Arabidopsis thaliana
transcript AT4G17050.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125315506|gb|EL329591.1|EL329591
EST:     AAATGCCAAGTTCAGGTTTGCCTCCACAAGACATAGAGCG                         TCTTATATTCGTGGTCGAGGGTG
genomic: AAATGTCAAGTTCAGGTTTGCCTCCACAAGACATAGAGCGgtattattac ... ctttttcaagTCTTATATTCGTGGTCGAGGGTG
EST: gi|19878038|gb|AU238869.1|AU238869
EST:     AAATGTCAAGTTCAGGTTTGCCTCCACAAGACATAGAGCG                         TCTTATATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGTTC
genomic: AAATGTCAAGTTCAGGTTTGCCTCCACAAGACATAGAGCGgtattattac ... ctttttcaagTCTTATATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgatctataatctgctttttaactcctttcaatattctgaatctttttcaagTCTTATATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGTTCTTCAAAAAAATTGACG
                   ttttaac  putative branch site (score: 2)
                                            tctttttc  putative PPT
                             tttcaatatt  TA-rich tract