1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acagaagcatgttccaaaagaaaactgcaaacacagctatattccacagaatagaagaaatgattataacttttatgtgatcttcttgtctttaaattagGTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATG
species | Arabidopsis thaliana |
transcript | AT4G17050.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTTTGTTGCTTCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTG GTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAEST: gi|86084005|gb|DR379764.1|DR379764
genomic: GGTTTGTTGCTTCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTGgtacgcaaca ... tttaaattagGTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCA
EST: GGTTTGTTGCTTCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTG GTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAEST: gi|125250621|gb|EL264706.1|EL264706
genomic: GGTTTGTTGCTTCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTGgtacgcaaca ... tttaaattagGTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCA
EST: TCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTG GTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCA
genomic: TCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTGgtacgcaaca ... tttaaattagGTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCA
acagaatagaagaaatgattataacttttatgtgatcttcttgtctttaaattagGTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATG
ttataac putative branch site (score: 2)
tcttcttgtcttt putative PPT
aagaaatgattataac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagaagcatgttccaaaagaaaactgcaaacacagctatattccacagaatagaagaaatgattataacttttatgtgatcttcttgtctttaaattagGTATCCAGTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATG
acagaag
- - - - - - - -aaaagaa
- - - - - - - - - - - - - -caaacac
- - - - - - - - - - - - - - - - - - - - - - cacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaat