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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattttggtttctctgtttacggctttctggtattgattttttttttctcaatatcccgttatccttttacagATGAGAACTTTAGATTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAAATTGTGGCCCAAATACCAACGGGTCCCAATTTTTTATACTTTTTAAACG

Basic information

species Arabidopsis thaliana
transcript AT3G63400.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125265560|gb|EL279645.1|EL279645
EST:     GCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAG                         ATGAGAACTTTAGATTGGACCATGATGGAGCT
genomic: GCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAGgtataatttt ... ccttttacagATGAGAACTTTAGATTGGACCATGATGGAGCT
EST: gi|164018380|gb|ES136267.1|ES136267
EST:     GGGAGAGCATCTATGGTGGGAAGTTTTCAG                         ATGAGAACTTTAGATTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAA
genomic: GGGAGAGCATCTATGGTGGGAAGTTTTCAGgtataatttt ... ccttttacagATGAGAACTTTAGATTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAA
EST: gi|86073052|gb|DR368809.1|DR368809
EST:     GCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAG                         ATGAGAACTTTAGATTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAA
genomic: GCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAGgtataatttt ... ccttttacagATGAGAACTTTAGATTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacggctttctggtattgattttttttttctcaatatcccgttatccttttacagATGAGAACTTTAGATTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAAATTGTGGCCCAAATACCAACGGGTCCCAATTTTTTATACTTTTTAAACG
             tattgat  putative branch site (score: 3)
                                    tcccgttatcctttt  putative PPT
             tattgatttttttttt  TA-rich tract