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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGCGGGCGTTGGAAAGTCCACTGGGAAGCCTCTACATTTCAAAGGATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAGgtatgtatgcattattcttttgcaaccctgtaatgtccttcactgacatataatttgtttttgtatgcatttgatggttcgcaaactctttattcattagcgcttctctttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G63400.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G63400.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ17103 (Selaginella moellendorffii), 5'ss of exon 3
GTGAGGCGGGCGTTGGAAAGTCCACTGGGAAGCCTCTACATTTCAAAGGATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAGgtatgtatgcattattcttttgcaaccctgtaatgtccttcactgacatataatttgtttttgtatgcatttgatggttcgcaaactctttattcattagcgcttctctttcttgcag
| |||   |||   || ||    |||||  |||  ||||||| |||||| ||    || ||  | ||||||||||| ||||||||||||||||||  |  || ||||  |      ||||  |||   | | ||      ||                                                                 
GCGAGATAGGCAAAGGCAAAGAAACTGGACAGCGACTACATTACAAAGGCTCTATCTTTCACAGAGTTATCAAAGGTTTCATGGCTCAGgtatgtg-gttttgttctacttttcggctgtg-tgtgacttagtgcatggcaag----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073052|gb|DR368809.1|DR368809
EST:     GATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAG                         GGTGGTGATTTTTCCAATGGGAATG
genomic: GATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAGgtatgtatgc ... tttcttgcagGGTGGTGATTTTTCCAATGGGAATG