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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgcattattcttttgcaaccctgtaatgtccttcactgacatataatttgtttttgtatgcatttgatggttcgcaaactctttattcattagcgcttctctttcttgcagGGTGGTGATTTTTCCAATGGGAATG

Basic information

species Arabidopsis thaliana
transcript AT3G63400.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073052|gb|DR368809.1|DR368809
EST:     GATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAG                         GGTGGTGATTTTTCCAATGGGAATG
genomic: GATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAGgtatgtatgc ... tttcttgcagGGTGGTGATTTTTCCAATGGGAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcatttgatggttcgcaaactctttattcattagcgcttctctttcttgcagGGTGGTGATTTTTCCAATGGGAATG
     atttgat  putative branch site (score: 5)
                                     cgcttctctttcttgc  putative PPT
                         tttattcatta  TA-rich tract