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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttgggcttcctcataacactttctgccatttaatctctccagaatgctttgataagattatgggctttacattttattgttatgatgttttttcctttgtgcagGTGAGGCGGGCGTTGGAAAGTCCACTGGGAAGCCTCTACATTTCAAAGGATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G63400.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164191622|gb|ES132843.1|ES132843
EST:     GCTGATGTTGTCCCCCAAGACAGCGGAAAACTTCCGTGCCCTCTGCACAG                         GTGAGGCGGGCG
genomic: GCTGATGTTGT-CCCCAAGACAGCGGAAAACTTCCGTGCCCTCTGCACAGgtaccttggg ... ctttgtgcagGTGAGGCGGGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataagattatgggctttacattttattgttatgatgttttttcctttgtgcagGTGAGGCGGGCGTTGGAAAGTCCACTGGGAAGCCTCTACATTTCAAAGGATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAG
 ctttgat  putative branch site (score: 5)
                                    tgttttttcctttgt  putative PPT
                tttacattttattgtt  TA-rich tract