1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGgtaaaaattatggatgtactggtatttccacgtttcagttattggcaataatatatttggtcaagatttgatagagaaaagcttggaaaagctttcattttggtattctctcatctcgtctctgtgatacag
species | Arabidopsis thaliana |
transcript | AT3G57650.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAG GATGCTCTGTTAGACAAACACATAGCTGCAGACACEST: gi|164193263|gb|ES019638.1|ES019638
genomic: ATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGgtaaaaatta ... tgtgatacagGATGCTCTGTTAGACAAACACATAGCTGCAGACAC
EST: CGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAG GATGCTCTGTTAGACAAACACATAGCTGCAGATACTTTCCCCGGTCAACAAEST: gi|125010389|gb|EL082658.1|EL082658
genomic: CGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGgtaaaaatta ... tgtgatacagGATGCTCTGTTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAA
EST: GCAGAGATCAGTTTGTGGCTAAG GATGCTCTGTTAGACAAACACATAGCTGEST: gi|86083571|gb|DR379330.1|DR379330
genomic: GCAGAGATCAGTTTGTGGCTAAGgtaaaaatta ... tgtgatacagGATGCTCTGTTAGACAAACACATAGCTG
EST: AATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAG GATGCTCTGTTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAA
genomic: AATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGgtaaaaatta ... tgtgatacagGATGCTCTGTTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGgtaaaaattatggatgtactggtatttccacgtttcagttattggcaataatatatttggtcaagatttgatagagaaaagcttggaaaagctttcattttggtattctctcatctcgtctctgtgatacag
- - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA