1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcttgatttctatgttgattgaatcgaggaaggaatctttttttctctcaacttcgtttgcttcagttttgatgtttactactacatattgttgtttcagGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAG
species | Arabidopsis thaliana |
transcript | AT3G57650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATCTGGTCTCGCTGTCAATCTCTTTCAG GCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAAEST: gi|116460345|gb|EG502937.1|EG502937
genomic: TATCTGGTCTCGCTGTCAATCTCTTTCAGgtttggtttc ... gttgtttcagGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAA
EST: CTTTGGGCCTTCTCTTCTTCATATCTGGTCTCGCTGTCAATCTCTTTCAG GCAGTTTGCTATGTACTCTTTCGACCACTGTCTAAAAACACATACAGAAAAEST: gi|124972927|gb|EL046591.1|EL046591
genomic: CTTTGGGCCTTCTCTTCTTCATATCTGGTCTCGCTGTCAATCTCTTTCAGgtttggtttc ... gttgtttcagGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAA
EST: TCTCGCTGTCAATCTCTTTCAG GCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAA
genomic: TCTCGCTGTCAATCTCTTTCAGgtttggtttc ... gttgtttcagGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAA
tctcaacttcgtttgcttcagttttgatgtttactactacatattgttgtttcagGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAG
ttttgat putative branch site (score: 4)
ttgtttc putative PPT
tacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgatttctatgttgattgaatcgaggaaggaatctttttttctctcaacttcgtttgcttcagttttgatgtttactactacatattgttgtttcagGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACATACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - gaaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacata