1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGAACTCGCTTTACAGAAGCCAAACTTAAAGCCGCACAAGAGTATGCAGCCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAAgtaagttgtaatatttttcttttgttcattcctggggcaacttgatatcttctctgtgtcctttaaaaagcaaaatgattgctatgatgatccaaaatct...
species | Arabidopsis thaliana |
transcript | AT3G57650.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAA GGTTTCGTGTCAGCCGTTAGTAAEST: gi|125189173|gb|EL204127.1|EL204127
genomic: CCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAAgtaagttgta ... tttgtttcagGGTTTCGTGTCAGCTGTTAGTAA
EST: TTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAA GGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTATEST: gi|86083571|gb|DR379330.1|DR379330
genomic: TTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAAgtaagttgta ... tttgtttcagGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTAT
EST: CTCGCACCAAA AGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTAT
genomic: CTCGCACCAAAgtaagttgta ... tttgtttcagGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAACTCGCTTTACAGAAGCCAAACTTAAAGCCGCACAAGAGTATGCAGCCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAAgtaagttgtaatatttttcttttgttcattcctggggcaacttgatatcttctctgtgtcctttaaaaagcaaaatgattgctatgatgatccaaaatct
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccaaaa