Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgggtagcctttatacgtttcattttcatcagatcgacttggtggttgttattgtgatttctgccctaattactagacttgcttgtatttttgtttcagGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTATGATATGACAGTGACTATTCCAAAAACCTCTCCACCACCCACGATGCTAA

Basic information

species Arabidopsis thaliana
transcript AT3G57650.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G57650.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv08s0007g08110.t01 (Vitis vinifera), 3'ss of exon 7
-atgggtagcctttatacgtttcattttcatcagatcgacttggtggttgttattgtgatttctgccctaattactagacttgcttgtatttttgtttcagGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTATGATATGACAGTGACTATTCCAAAAACCTCTCCACCACCCACGATGCTAA
  |   |    |  |||| | ||| |||    ||  |          || |  | ||    || |   || ||| |    ||  || | |||   | ||||||||| || |||||||| ||| | |||||||||||||| |||||  |||||||| | |||||| | ||||| |||||    ||  |||| || ||||| |
cttcatttttatgcatacctctcaattttgggagtgccgtgattcaattttattggtttgatcagaaatatttatttctattatttctgtttgc-tatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTATGATGTAACAGTGGCAATTCCCAAAACTCAGCCTTCACCAACAATGCTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124816806|gb|EH901672.1|EH901672
EST:     CCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAA                         GGTTTCGTGTCAGCCGTTAGTAA
genomic: CCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAAgtaagttgta ... tttgtttcagGGTTTCGTGTCAGCTGTTAGTAA
EST: gi|125189173|gb|EL204127.1|EL204127
EST:     TTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAA                         GGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTAT
genomic: TTGCCTATCCCTCGAAATGTGTTGATTCCTCGCACCAAAgtaagttgta ... tttgtttcagGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTAT
EST: gi|86083571|gb|DR379330.1|DR379330
EST:     CTCGCACCAAA                         AGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTAT
genomic: CTCGCACCAAAgtaagttgta ... tttgtttcagGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttattgtgatttctgccctaattactagacttgcttgtatttttgtttcagGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATTTATGATATGACAGTGACTATTCCAAAAACCTCTCCACCACCCACGATGCTAA
                   ccctaat  putative branch site (score: 3)
                                           tttttgtttc  putative PPT
                                      ttgtatttttgttt  TA-rich tract