Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctataaaattcataacattctcttggttccatctataaactcacaaatctcttgatctttttctcagGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATAAAGTTCCTACACTGGGCACAACTCTTTTCTTCATGGAAAGGTATCACGATATCGGCGC

Basic information

species Arabidopsis thaliana
transcript AT3G57650.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125279245|gb|EL293330.1|EL293330
EST:     TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCG                         GTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATAAAGT
genomic: TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCGgtgagtctat ... tttttctcagGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATAAAGT
EST: gi|124713080|gb|EH804482.1|EH804482
EST:     TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCG                         GTGGTTCTATCATGGGCATGCGTACTAACT
genomic: TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCGgtgagtctat ... tttttctcagGTGGTTCTATCATGGGCATGCGTACTAACT
EST: gi|125067973|gb|EL134283.1|EL134283
EST:     TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCG                         GTGGTTCTATCATGGGCATG
genomic: TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCGgtgagtctat ... tttttctcagGTGGTTCTATCATGGGCATG
EST: gi|125254236|gb|EL268321.1|EL268321
EST:     TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCG                         GTGGTTCTATCATGGGCATGCGTACTAACTCT
genomic: TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCGgtgagtctat ... tttttctcagGTGGTTCTATCATGGGCATGCGTACTAACTCT
EST: gi|86083571|gb|DR379330.1|DR379330
EST:     TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCG                         GTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATAAAGTTCCTA
genomic: TCCCCGGTCAACAAGAACAGAACATTGGCCGTCCCATAAAGTCCCTTGCGgtgagtctat ... tttttctcagGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATAAAGTTCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacattctcttggttccatctataaactcacaaatctcttgatctttttctcagGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATAAAGTTCCTACACTGGGCACAACTCTTTTCTTCATGGAAAGGTATCACGATATCGGCGC
                                   tctcttgatctttttc  CT-rich tract
                  atctataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtctataaaattcataacattctcttggttccatctataaactcacaaatctcttgatctttttctcagGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATAAAGTTCCTACACTGGGCACAACTCTTTTCTTCATGGAAAGGTATCACGATATCGGCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA