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...tttataatgtgtaagaaaccgtaggactcatcccatcccaagcctttttcttttaaaacctcctgcgccattaacgcaaaccattgctgctggtttcaagGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAG
species | Arabidopsis thaliana |
transcript | AT3G57650.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCTCCACCACCCACGATGCTAAGACTATTCAAAGGACAACCTTCAGTG GTGCATGTTCACATCAAGTGTCACTCGATGAAEST: gi|124998435|gb|EL070704.1|EL070704
genomic: CCTCTCCACCACCCACGATGCTAAGACTATTCAAAGGACAACCTTCAGTGgtaagcaagc ... tggtttcaagGTGCATGTTCACATCAAGTGTCACTCGATGAA
EST: CCTCTCCACCACCCACGATGCTAAGACTATTCAAAGGACAACCTTCAGTG GTGCATGTTCACATCAAGTGTCACTCGATGAAAGEST: gi|124715569|gb|EH806971.1|EH806971
genomic: CCTCTCCACCACCCACGATGCTAAGACTATTCAAAGGACAACCTTCAGTGgtaagcaagc ... tggtttcaagGTGCATGTTCACATCAAGTGTCACTCGATGAAAG
EST: CAAAGGACAACCTTCAGTG GTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGATEST: gi|86083571|gb|DR379330.1|DR379330
genomic: CAAAGGACAACCTTCAGTGgtaagcaagc ... tggtttcaagGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGAT
EST: CYTCTCCACCACCCACGATGCTAAGACTATTCAAAGGACAACCTTCAGTG GTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGAT
genomic: CCTCTCCACCACCCACGATGCTAAGACTATTCAAAGGACAACCTTCAGTGgtaagcaagc ... tggtttcaagGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGAT
ttttcttttaaaacctcctgcgccattaacgcaaaccattgctgctggtttcaagGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAG
cattaac putative branch site (score: 2)
ttttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttataatgtgtaagaaaccgtaggactcatcccatcccaagcctttttcttttaaaacctcctgcgccattaacgcaaaccattgctgctggtttcaagGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCTGAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - -taagaaa
- - - - - - - - - - - - - - - - ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacca