1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGATTCGGATCAGTTCAATTTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgataattttccttgtataaacctaattcagtagatgcagttttgtatttagcatcattaatagacattgtttggtaagatatgaatgatgatga...
species | Arabidopsis thaliana |
transcript | AT3G42050.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|152033932|gb|BP820357.2|BP820357
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031310|gb|DR327063.1|DR327063
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031302|gb|DR327055.1|DR327055
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|116433606|gb|EG476198.1|EG476198
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|116433595|gb|EG476187.1|EG476187
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031298|gb|DR327051.1|DR327051
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACAC-AAGCTGGTTEST: gi|86031307|gb|DR327060.1|DR327060
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031303|gb|DR327056.1|DR327056
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|163967732|gb|ES057313.1|ES057313
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACEST: gi|86031311|gb|DR327064.1|DR327064
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACAC
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031308|gb|DR327061.1|DR327061
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|125195193|gb|EL210147.1|EL210147
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: CCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031304|gb|DR327057.1|DR327057
genomic: CCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031313|gb|DR327066.1|DR327066
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031315|gb|DR327068.1|DR327068
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031316|gb|DR327069.1|DR327069
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GNATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031312|gb|DR327065.1|DR327065
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031300|gb|DR327053.1|DR327053
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTTEST: gi|86031317|gb|DR327070.1|DR327070
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
EST: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAG GTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
genomic: TTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgata ... tactttgcagGTATTGAAAAGGGACATTCCATGGGAGACTTACATGAACACTAAGCTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTCGGATCAGTTCAATTTCAAGTTTCTGAACCACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGgttggtgataattttccttgtataaacctaattcagtagatgcagttttgtatttagcatcattaatagacattgtttggtaagatatgaatgatgatga
- - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagaca