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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttcttttattcctctctgctcaacacccacacttgtagtgcttttagagcgggctggttcaatcctttttggccttagacaacaaccctaaccacttgttaaacttgtggacgcagATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCATTGGCGGTGGCATGCTTTGATATCTCACAGTTCATACAATACCATGCAG

Basic information

species Arabidopsis thaliana
transcript AT3G42050.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124778098|gb|EH868041.1|EH868041
EST:     CCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAG                         ATACTCAGGGTCCTCCTCACAA
genomic: CCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttct ... gtggacgcagATACTCAGGGTCCTCCTCACAA
EST: gi|86075179|gb|DR370936.1|DR370936
EST:     AATGTCACATGCTTTGAGGAGAACGACTTCCAG                         ATACTCA-GGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
genomic: AATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttct ... gtggacgcagATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
EST: gi|86031301|gb|DR327054.1|DR327054
EST:     CCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAG                         ATACTCNNNNTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
genomic: CCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttct ... gtggacgcagATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
EST: gi|124952669|gb|EL027921.1|EL027921
EST:     AGAATGTCACATGCTTTGAGGAGAACGACTTCCAG                         ATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
genomic: AGAATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttct ... gtggacgcagATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctttttggccttagacaacaaccctaaccacttgttaaacttgtggacgcagATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCATTGGCGGTGGCATGCTTTGATATCTCACAGTTCATACAATACCATGCAG
                        ccctaac  putative branch site (score: 2)
                                  ttgttaaa  TA-rich tract