1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAAGAGGTGCTCCTTGGCCATCTTGACTGGAACCCAATGCACAAGGAGACCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttcttttattcctctctgctcaacacccacacttgtagtgcttttagagcgggctggttcaatcctttttggccttagacaacaaccctaaccacttgttaaacttgtggacgcag
species | Arabidopsis thaliana |
transcript | AT3G42050.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAG ATACTCAGGGTCCTCCTCACAAEST: gi|86075179|gb|DR370936.1|DR370936
genomic: CCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttct ... gtggacgcagATACTCAGGGTCCTCCTCACAA
EST: AATGTCACATGCTTTGAGGAGAACGACTTCCAG ATACTCA-GGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCAEST: gi|86031301|gb|DR327054.1|DR327054
genomic: AATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttct ... gtggacgcagATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
EST: CCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAG ATACTCNNNNTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCAEST: gi|124952669|gb|EL027921.1|EL027921
genomic: CCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttct ... gtggacgcagATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
EST: AGAATGTCACATGCTTTGAGGAGAACGACTTCCAG ATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
genomic: AGAATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttct ... gtggacgcagATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGAGGTGCTCCTTGGCCATCTTGACTGGAACCCAATGCACAAGGAGACCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGAGAACGACTTCCAGgtattcttcttttattcctctctgctcaacacccacacttgtagtgcttttagagcgggctggttcaatcctttttggccttagacaacaaccctaaccacttgttaaacttgtggacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA