1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAGGAACCTTCTTCCAAAAGGTACATTTGGTGCCCAGATGGTTGATCTTGGACTCCCACATATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGgtaagacaacttaaatgcttgttagttgttatgtggaacctgaatttcttaattttctgctacatctggtgatataagtgatgccggtaacattagatgtgtttttgtattacggtgatagtgaaaacccttaaattctgaacttgtaag
species | Arabidopsis thaliana |
transcript | AT3G42050.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GACTCCCACATATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAG GACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATCEST: gi|124925944|gb|EL003863.1|EL003863
genomic: GACTCCCACATATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGgtaagacaac ... aacttgtaagGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATC
EST: GACTCCCACATATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAG GACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGAEST: gi|124784886|gb|EH874569.1|EH874569
genomic: GACTCCCACATATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGgtaagacaac ... aacttgtaagGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGA
EST: TTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAG GACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATCEST: gi|164206935|gb|ES059481.1|ES059481
genomic: TTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGgtaagacaac ... aacttgtaagGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATC
EST: CTAAAAACACAAGCATGGAGTGACGAG GACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATCEST: gi|125229979|gb|EL244064.1|EL244064
genomic: CTAAAAACACAAGCATGGAGTGACGAGgtaagacaac ... aacttgtaagGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATC
EST: TTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAG GACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATCEST: gi|124737838|gb|EH829240.1|EH829240
genomic: TTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGgtaagacaac ... aacttgtaagGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATC
EST: TATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAG GACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATC
genomic: TATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGgtaagacaac ... aacttgtaagGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGAACCTTCTTCCAAAAGGTACATTTGGTGCCCAGATGGTTGATCTTGGACTCCCACATATTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGgtaagacaacttaaatgcttgttagttgttatgtggaacctgaatttcttaattttctgctacatctggtgatataagtgatgccggtaacattagatgtgtttttgtattacggtgatagtgaaaacccttaaattctgaacttgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA