Sequence
atgc intronic sequence ATGC exonic sequenceGATGCAAAAAAAGGTGTTCTATTCATAGACTTTCCACCAGTTCTTCAACTTCAGCTCAAGAGGTTTGAATACGATTTTATGAGGGACACAATGGTGAAGgttggtatttgaaattccacttacccagcaaaaaacagcatgtagtgactgtgtttagacttgattttaagctgacgttactttctttacag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G11910.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 9
GATGCAAAAAAAGGTGTTCTATTCATAGACTTTCCACCAGTTCTTCAACTTCAGCTCAAGAGGTTTGAATACGATTTTATGAGGGACACAATGGTGAAGgttggtatttg-aaattccacttacccagcaaaaaacagcatgtagtgactgtgttta--gacttgattttaagctgacgttactttctttacag-----
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GATGCTAAGAAGGGTGTCTTATTTATTGACTTCCCACCAGTTCTTCAACTTCAGCTAAAGCGGTTTGAGTATGACTTCATGCGGGACACTATGGTGAAGgtcagtactaggaaattctctttgcttcatcatgattagtgttacatggtttggttgaatgttttgcttgtctccttgtatttcattagtattgattgtg
upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 9
GATGCAAAAAAAGGTGTTCTATTCATAGACTTTCCACCAGTTCTTCAACTTCAGCTCAAGAGGTTTGAATACGATTTTATGAGGGACACAATGGTGAAGgttggtatttgaaattccacttacccagcaaaaaacagcatgtagtgactgtgt-ttagacttgattttaagctgacgttac---tttctttacag--------------------------------
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GATGCGAAAAAAGGAGTCCTATTTATAGACTTCCCCCCTGTTCTTCAGCTACAGTTAAAGCGTTTTGAGTATGACTTTATGCGAGACACAATGGTGAAGgtgaagagattttcttcattctcttcaatttgctgcattgtgttcttctagcttgttagttctgtatttgatgtattattctgcgtctttttatactgtttgcttcaagcaatatttctgttgtgcag
upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 9
GATGCAAAAAAAGGTGTTCTATTCATAGACTTTCCACCAGTTCTTCAACTTCAGCTCAAGAGGTTTGAATACGATTTTATGAGGGACACAATGGTGAAGgttggtatttgaaatt-----ccacttacccagcaaaaaacagcatgtagtgactgtgtttagact-----tgattttaagctgacgttactttctttacag-----------------------------------------------------------------------------------
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GATGCAAAAAAAGGAGTCCTATTTATAGACTTCCCCCCTGTTCTTCAGCTCCAACTGAAACGGTTTGAATACGACTTCATGCGAGACACAATGGTGAAGgtgaggaaaggggttttcgaaccatgcaatatgcaacattcggctggtatagcttatgtattgattgtgcatattatttagatgaaggacgtgtgtgtgtgtgtgtgtgtatttgctttgttttggttggttggtagtcacttttttactactgattacctttgaacattatttatgtgatgcag
upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ18164 (Selaginella moellendorffii), 5'ss of exon 7
GATGCAAAAAAAGGTGTTCTATTCATAGACTTTCCACCAGTTCTTCAACTTCAGCTCAAGAGGTTTGAATACGATTTTATGAGGGACACAATGGTGAAGgttggtatttgaaattccacttacccagcaaaaaacagcatgt---agtgactgtgtttagacttgattttaagctg-acgttactttctttacag
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GATGCACGCAAGGGCGTGCTCTTTGTGGATTTTCCCCCTGTTCTCCAGCTTCAACTCAAGCGGTTTGAATATGATTTTGTGCGAGACACAATGGTTAAGgt-aatagcttgaactacgttgtgttggtggatggttcctagttccattcactgaatttgggctgtttattgaacagtgcctaattatgctggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164142494|gb|ES202896.1|ES202896EST: GAGGGACACAATGGTGAAG ATTAATGATCGGTATGAGTTTCCTCTCCAACTGGATCTCGACAGAGAAGAT
genomic: GAGGGACACAATGGTGAAGgttggtattt ... ttctttacagATTAATGATCGGTATGAGTTTCCTCTCCAACTGGATCTCGACAGAGAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGCAAAAAAAGGTGTTCTATTCATAGACTTTCCACCAGTTCTTCAACTTCAGCTCAAGAGGTTTGAATACGATTTTATGAGGGACACAATGGTGAAGgttggtatttgaaattccacttacccagcaaaaaacagcatgtagtgactgtgtttagacttgattttaagctgacgttactttctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG