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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactaccttgctgtcaagtttaattgttgaggcttatttattgaatgaagggaagaaattaaatagtcttactaattcttgaattattcagGATGACCTTCCTATTCCTCCCCCAGAAAAAACTTCTGAGGATATCCTTCTTTTCTTTAAACTCTATGACCCTGAGAACGCAGTACTAAG

Basic information

species Arabidopsis thaliana
transcript AT3G11910.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11910.2 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 3'ss of exon 17
-----------------------------------------------------------------------------gtaatactaccttgctgtcaagtttaattgttgaggcttatttattgaatgaa-----gggaagaaattaa---atagtcttactaattc--ttgaattattcagGATGACCTTCCTATTCCTCCCCCAGAAAAAACTTCTGAGGATATCCTTCTTTTCTTTAAACTCTATGACCCTGAGAACGCAGTACTAAG
                                                                             | | |  | | |   |||    |  ||||  | |    ||| ||     |        || |||| |||       | | |   ||| ||  |  |||   |||||||   | |||||||||||| || |||||||||   || ||||| || |||||||| || || |||||||||||||| | ||  ||  |
gtatatcttcactgcataatccggattttatccttaagaacatttaatcagtgtttgagttatttttcggctattcaggactggtgcataattgttgcttggaattaataatttctatgtacaatgtccttttctggcaagatattttcctgcactttagttaactccatataatacctcagGATCTGCGTCCTATTCCTCCACCTGAAAAAACTAAAGAAGATATTCTGCTTTTCTTCAAGCTTTATGACCCTGAGAAAGAAGAGCTCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124793727|gb|EH883406.1|EH883406
EST:     CTAAAGCTGTTTTTGGAAATAGAGCGTGGACCG                         GATGACCTTCCTATTCCTCCCCCAGAAAAAACTTCTGAGGATATCCTTCTT
genomic: CTAAAGCTGTTTTTGGAAATAGAGCGTGGACCGgtaatactac ... aattattcagGATGACCTTCCTATTCCTCCCCCAGAAAAAACTTCTGAGGATATCCTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattgaatgaagggaagaaattaaatagtcttactaattcttgaattattcagGATGACCTTCCTATTCCTCCCCCAGAAAAAACTTCTGAGGATATCCTTCTTTTCTTTAAACTCTATGACCCTGAGAACGCAGTACTAAG
                                 tactaat  putative branch site (score: 1)
                   aaattaaatagtctta  TA-rich tract