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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgttatgtgaaacagtaacccatcttctgttgtctgaatttattggaagctaacatattaataatatcaaactaactttacagctgtgtctttgacttattccag

Basic information

species Arabidopsis thaliana
transcript AT3G11910.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 7
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgttat---gtgaaacagtaaccc--atcttctgttgtctgaatttattggaagctaacatattaataatatcaaactaactttacagctgtgtctttgacttattccag
||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||||||||||| || |||||||||||| ||||||| ||||| ||||||| || |    ||||||     |||    |  | | |||| |  || ||||       |  ||  ||    |||||   ||  ||   | || | |  | |           
GTGGAAGGGACAATTCAACAGCTATTTGAAGGTCATCATATGAATTATATTGAGTGCATTAATGTTGACTACAAATCTACAAGGAAAGAATCATTCTATGgtaggtgacaaggtgaaatctggaccttgtttctttattgtttttatctattca---tcatgattgtagatttatcatg-tattttcgtaactcttttctag-----------

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 7
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgttatgtgaaacagtaacccatcttctgttgtctg-aatttattggaagctaacatattaataatatcaaactaactttacagctgtgtctttgacttattccag
||||| ||||||||  || |  |||||||||| |||||||| || || || |||||||||||||| ||||| |||||||   | ||||| || |||||||||| | | | | | |  | |   |||    | |  | |  |||||| ||    || |  |  ||| | |                                        
GTGGAAGGAACAATTGAACAATTATTTGAAGGCCACCACATAAACTATATCGAGTGCATTAATGTTGATTATAAATCTAACAGAAAAGAATCCTTTTATGgtaagctttttcacattgaa---cattcagtatcatttttaatttagtgcttactcatgttataacattgcag------------------------------------

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 7
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgttatgtgaaacagtaacccatcttctgttgtctgaatttattggaagctaacatattaataatatcaaactaactttacagctgtgtctttgacttattccag
||||| ||||||||  || |  |||| ||||| |||||||| |||||||||||||||||||| || || || |||||||   | ||||| ||||||||||||| ||| ||| |   | |    | |         ||   || ||||   |  | | |||| |||||||     |||   | |   |||                   
GTGGAAGGAACAATTGAACAATTATTCGAAGGCCACCACATTAATTACATTGAGTGCATTAACGTGGACTATAAATCTAACAGAAAAGAATCATTTTATGgtaggttctgtcatttaattgtacttgcaggaaaatc---atatatttata--tgatatataaataatagttgccta-tgtcatgactggcag---------------

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 3
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgttat----gtgaaacagtaacccatcttc-tgttgtctgaatttattggaagc--taacata-----ttaataatatcaaactaactttacagctg-tgtctttga-cttattccag----------------------------------------------------------
||||| ||| ||||||||||  | || || |||||||| |||||||| || ||||| |||||||| || |  ||||||||  ||||||||||||| ||||||| || |     |  ||| |  |||   | ||  |||| | | | || |    |  |  || ||||     ||| |  | |   ||     || ||   | ||||| ||| | | ||   |                                                          
GTGGAAGGAGCAATACAAAAATTGTTCGAGGGTCACCATATGAATTATATCGAGTGTATTAATGTTGAGTCTAAATCTACCAGGAAAGAGTCATTCTATGgtaggtaacaaggggaaaatatgaacttgttttgatgttttattagttgacaaaagtcaataccatacttgtttacttcttttccacaggtcttgcactcgatgtctatgaacatgttttggtgttttattagttggcaagagtcaatatcatacttgtttgtttacttcttttccacag

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgt-tatgtgaaacagtaacccatcttctgttgtctga--------atttattggaagctaacatatt--aataatat-caaactaactttacagctgtgtctttgacttattccag---------------------
|||||||| ||||||||  || | |||||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||| | || || ||||||||||||||   | | ||   ||      |||  | ||| |   |         ||| || ||||   |  ||| |  ||  ||||     ||||  | | |     |      |  |   |                        
GTGGAGGGGACAATACAGCAGTTGTTTGAAGGGCACCATATGAACTACATTGAGTGCATCAATGTGGACTACAAATCTACAAGAAAGGAATCATTTTATGgtattcatttttggttcaagcttacattctttgtagctaggcattcgctattaatgggaatgcatgatacttgaactatatatgtcctaatataaaaagaaaggaaaaaaaatgaactgcatttttatttttgcatggcag

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 7
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgttatgtgaaacagtaacccatcttctgttgtctgaatttattggaagctaacatattaataatatcaaactaactttacagctgtgtctttgacttattccag
|| ||||| ||||| ||  | || || ||||| || |||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||| || ||||||| |   | || |   | |           | ||   ||   | |   || | |  ||  |  |    |     | | |  ||| |||  |||| ||   |      
GTCGAGGGCACAATCCAGCAACTGTTCGAAGGGCATCACATGAACTACATAGAGTGCATCAATGTTGATTATAAATCAACACGGAAAGAGTCTTTCTATGgtacgac-tatgcagttgaagttagaagcaggatg---gagactttgacaatcaagaatgattctttattttgtttcattgaacatctg--tcttagaaagaggag--

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 7
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgttatgtgaaacagtaacccatcttctgttgtctgaatttattggaagctaacatattaataatatcaaactaactttacagctgtgtctttgacttattccag
|| ||||| ||||| ||| | || ||||||||||| || ||||| ||||| ||||| || ||||| || ||||| || ||||| ||||||||||||||||||| | | |     |||||   |  | |    | |  ||    | || | |  | |  |     || ||   ||  || | | ||  |    | ||| || | |  | 
GTTGAGGGCACAATTCAACAACTGTTTGAAGGTCATCATATGAACTACATAGAGTGTATCAATGTTGACTACAAGTCAACACGCAAAGAGTCATTTTATGgtacggtttc----acagtt-tctgtttgagatagggtggggatcttcgtatgtgatcttaatttattacgtaataaattattca--ttgaccgttgtctgagttga-

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ19227 (Selaginella moellendorffii), 5'ss of exon 7
GTGGAGGGAACAATACAAAAGCTATTTGAAGGTCACCACATGAATTACATTGAGTGCATTAATGTAGATTACAAATCTACACGGAAAGAGTCATTTTATGgtatgtt-atgtgaaacagtaacccatcttctgttgtctgaatttattggaagctaacatattaataatatcaaactaactttacagctgtgtctttgacttattccag
|| || ||||| || ||| |||| ||||| ||||| || ||||| ||||| || ||||| || || |||||||||||||| |||||||||||||||||||||||||| || |  |  |||  |    |||||     |     |||  |                                                            
GTTGAAGGAACGATTCAACAGCTTTTTGAGGGTCATCATATGAACTACATCGAATGCATCAACGTCGATTACAAATCTACGCGGAAAGAGTCATTTTATGgtatgttgatattgagtagt--ctgggcttctcacaacgtgtgttacag------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125214698|gb|EL229016.1|EL229016
EST:     GAGTCATTTTATG                         ACCTCCAGCTTGATGTTAAAGGCTGCAAAGATGTATATGCTTCTTTTGACA
genomic: GAGTCATTTTATGgtatgttatg ... cttattccagACCTCCAGCTTGATGTTAAAGGCTGCAAAGATGTATATGCTTCTTTTGACA