Sequence
atgc intronic sequence ATGC exonic sequencegtaagtacctttatggacaacctttgtttcgttgatttcagtataggaattcataatgcttctactttcagGTCAAAGCTGCACACTTATGATGATGTAGTGGAAAGGGTGGCTGAGAAGCTTGGCCTTGACGATCCATCAAAACTTAGGCTTACATCTCACAATTGCTAC
Basic information
| species | Arabidopsis thaliana |
| transcript | AT3G11910.1 |
| intron # | 22 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G11910.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 3'ss of exon 22
-------------------gtaagtaccttt---atggacaacctttgtttcgttgatttca-gtataggaattcataatgcttctactttc--agGTCAAAGCTGCACACTTATGATGATGTAGTGGAAAGGGTGGCTGAGAAGCTTGGCCTTGACGATCCATCAAAACTTAGGCTTACATCTCACAATTGCTAC
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gtaagtacatatccatctaatcagtggttctgacatgatgagaatctgttgtttttatttgatgtctgtaaccctctttcatttatattattcaagGTCAAAGCTACACAATTATGATGATGTTGTGGAAAGAGTGGCTCGTAGACTTGGTTTGGATGATCCATCCAAAATCAGACTTACATCTCACAACTGCTAT
upper sequence: AT3G11910.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 3'ss of exon 22
------------------------------gtaagtacctttatggacaacctttgttt-cgttgatttcagtataggaattcataatgcttctacttt-cagGTCAAAGCTGCACACTTATGATGATGTAGTGGAAAGGGTGGCTGAGAAGCTTGGCCTTGACGATCCATCAAAACTTAGGCTTACATCTCACAATTGCTAC
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tgtgagtccagtttttaggcgtgtgtgctaacaaatatcgagaagtagctcttttatctgtgttaagat--gtattgaaaagttaaat-cttgtactttgtagGTCAAAGCAACACACATATGATGATGTGGTTGAGAGGGTAGCAGAGAAAATTGGTCTGGAGGATGCATCAAAAATCAGGCTAACATCACACAATTGCTAC
upper sequence: AT3G11910.1 (Arabidopsis thaliana), 3'ss of exon 22
lower sequence: PP1S104_2V6.1 (Physcomitrella patens), 3'ss of exon 21
------------------------------------------gtaagtacc----tttatggacaacctttgtttcgtt------gatttc----agtataggaattcataatgcttctacttt-cagGTCAAAGCTGCACACTTATGATGATGTAGTGGAAAGGGTGGCTGAGAAGCTTGGCCTTGACGATCCATCAAAACTTAGGCTTACATCTCACAATTGCTAC
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gtaagtatcagagcaactctactcaggtgtaaatcccatcgcatatgtatcagtgtttgtttcatatccttgccgaatttaaatagattttggagagtattgtttttcaagatcatgttgcaatgcagATCAAAGCAACACACGTATGATGATGTAGTAGAAAAAGTTGCTAAGAAGCTCGGACTCGAGGATCCTTCAAAACTTAGGCTCACGTCACATAACTGTTACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124906053|gb|EH980133.1|EH980133EST: CGTTTTCGCACACTGGAAAAACCAAAAGAGGATGAGTTTACTATGGAGCT GTCAAAGCTGCACACTTATGATGATGTAGTGGAAAGGGTGGCTGAGA
genomic: CGTTTTCGCACACTGGAAAAACCAAAAGAGGATGAGTTTACTATGGAGCTgtaagtacct ... ctactttcagGTCAAAGCTGCACACTTATGATGATGTAGTGGAAAGGGTGGCTGAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaacctttgtttcgttgatttcagtataggaattcataatgcttctactttcagGTCAAAGCTGCACACTTATGATGATGTAGTGGAAAGGGTGGCTGAGAAGCTTGGCCTTGACGATCCATCAAAACTTAGGCTTACATCTCACAATTGCTAC
cgttgat putative branch site (score: 5)
cttctactttc putative PPT
aattcataat TA-rich tract
