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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGgtaagaaattcatatacacgggttttcctttttacctgtctggattttgcttgattcagctaattacttcctaccag

Basic information

species Arabidopsis thaliana
transcript AT3G11910.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 13
AAAATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGgtaagaa--attcatatacacgggttttcctttttacctgtctggattttgcttgattcagctaattacttcctaccag----------
||| || |||||||| ||||||||||| |||||||| || || ||||||||||| ||||| || || |||||||| || ||||| || || |||||||||||||| |  || ||||| | |     ||||| || |    | |  |  ||  |    |    | |     | | ||             
AAAGTATTCGAATGCCTACATGCTTGTCTATATTCGTGAGAGCGACAAGGATAAAATAATGTGTAATGTTGATGAAAAGGACATCGCTGAGCATTTGCGGgtaagtatcatgcatattctcctaccttcctattcagtattttatacatttttcaggtgttttgagggaattcaactgtgctcttgcag

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 9
AAAATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGgtaagaaat-tcatatacacgggttttcctttttacctgtctggattttgcttgattcagctaattacttcctaccag----------------------
||| || || ||||| ||||||||||| || || || || ||||| ||||| || ||||| || || ||||||||||| |||||||| || |||||  ||||| |   | |  |  |  |    |   | ||   ||  | |      | |     |  |  |||  | ||  |   |                      
AAAGTATTCAAATGCCTACATGCTTGTCTACATCCGTGAGAGTGATAAGGACAAAATAATGTGTAATGTTGATGAGAAGGACATTGCTGAGCATTTAAGGgtatgtgttgttttgcattctcactcctccttgggccaatttcctcgataccacgattggaaaataccatcgcatgtgtcaacacacgtgggcccaggcc

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 13
AAAATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGgtaagaaattcatatacacgg-gttttcctttttacctgtc----tg-gattttgct--------tgattcagctaattacttcctaccag
||| || || ||||| ||||||||||| ||||| || || | |||||||||||| ||||| || || || |||||||| || ||||| || |||||||||||||| | |||   || ||   ||   | ||| ||  | ||    || | ||||| |        ||||| |   || |  |   |  |||
AAAGTATTCAAATGCCTACATGCTTGTCTATATACGTGAGAATGACAAGGATAAAATAATGTGTAATGTCGATGAGAAGGATATTGCTGAGCATTTGCGGgtaagtagttctggtatactttgtccccttttctatgtatcatcttgtgtttttgttggagatagtgattgattgaactgttcttttacag

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G303655_T01 (Zea mays), 5'ss of exon 3
AAAATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGgtaagaaattc------------atatacacgggttttcctttttacctgtctggattttgctt---------gattcagctaattacttcctaccag
||| || |||||||| ||||||||||| ||||| || || |||||||| || || ||||| || || || |||||||| ||||| || || |||||||||||||| | |||            |||    |    ||| |||| || |    || |||||  ||         |||| |   || || |   |  |||
AAAGTATTCGAATGCCTACATGCTTGTCTATATACGTGAGAGTGACAAAGAGAAAATAATGTGTAATGTCGATGAGAAGGACATCGCTGAGCATTTGCGGgtaagtagttcggtagttcctgtatactttcccacttttctttgtatcatcttgtatttttgttgaagatagtgattgattgaactattcttttacag

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 9
AAAATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGgtaagaaattcat---atacacgggttttcctttttacctgtctggattttgcttgattcag--ctaattacttcctaccag------------------
 ||  | || ||||| |||||||||||||| ||||| ||||||||||| ||||| || |||||  |  | |||||  |||| ||| | |||||  |   ||||     || ||   ||         ||  |   |||    | |     ||  | | |||    |   ||  |   || ||                  
CAAGCATTCAAATGCTTACATGCTTGTTTACATTCGAGAAAGTGACAAAGATAACATTATCTGTGATTTGGATGATGAAGATATTTCAGAACACCTTAAGgtatactttttattcaattttaaaaaattattaaatactctcccgtcccgtgaataagtcaaacttttctagatttgacaagtttttaggaaaaatatca

upper sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
AAAATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGgtaaga-----------------aattcatatacacgggttt--tcctttttacctgtctggatttt--gcttgattcagctaattacttccta---ccag
 |||||||| ||||||||||||||||| ||||| || |||||||||||||| || || || || || || |||||||| |||||||| |||||  |  |||||| |                 |||| |  ||||  | |||  |  |||  |  |||||| || |   | |  |  | |  ||| |    |||   ||||
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacatttggttttatttgtaattgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag