Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGgttggtccgtctagttcctccgtttcagaaaaactgtactgaattttgtaaagtcggttagtgttaggcttctaatcaacacataaaaattggggttgttgttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G01550.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084346|gb|DR380105.1|DR380105
EST:     TTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATRGCTMCCAACAG                         GTAYCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
genomic: TTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGgttggtccgt ... gttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
EST: gi|125211808|gb|EL226762.1|EL226762
EST:     CTTGCTGGTGTTTGCTTGCATAGCTACCAACAG                         GTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
genomic: CTTGCTGGTGTTTGCTTGCATAGCTACCAACAGgttggtccgt ... gttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
EST: gi|47828631|gb|CK118315.1|CK118315
EST:     TTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAG                         GTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG
genomic: TTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGgttggtccgt ... gttgttgtagGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGG