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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAGgtaaaagagtttgaatataagttatccttatgatctcaagaaagaaactagtaatcgaaatctattaatgtttgtatattgaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G01550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01550.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv14s0066g01000.t01 (Vitis vinifera), 5'ss of exon 6
GATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAGgtaaaagagtttgaatataagttatccttatgatctcaagaaagaaactagtaatcgaaatctattaatgtttgtatat---tgaaacag---------------
|| ||||||||| |||||||||||||| ||| |||| ||||||||||| |||||  |||| ||||||||||||||    || |      |||  ||||  || ||||  ||    | |    |     ||   |     |||  ||||  || |   |||    || || |                
GACTGGTTTCTGGAGTGCAATGGCTTCCAATTTGACAAATCAATCACGTAATGTGTTCAGCAAAAAATTCATGGTCAACAAAGAGgtgaagt--gaattcaacttatttttcatgtatttgaatcaccacagctccataaaaaatattgctgctctaatacaagtggaaaaatgatggtttcttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084346|gb|DR380105.1|DR380105
EST:     TGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAG                         GACGCTTTGGACAACATCAACCTTTTCTCTATAATAACCATTATCYCCTTT
genomic: TGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAGgtaaaagagt ... attgaaacagGACGCTTTGGACAACATCAACCTTTTCTCTATAATAACCATTATCTCCTTT