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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacaacaagaacaagaacaaaaaaaatagtattcttgataaacttttgatgaagttttaattgatttgattaattcatggtattgggataaaccagGATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAG

Basic information

species Arabidopsis thaliana
transcript AT3G01550.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01550.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv14s0066g01000.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------------------------------------------------------gtatgaacaacaagaacaagaacaaaaaaaatagtattcttgataaacttttgatgaagttttaattgatttgattaat-tcatggtattgggataaaccagGATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAG---
                                                                              | || |||         | |   ||| || ||||| |    ||||  |   | |  ||   | ||     | | | |  | |||         | || ||||| ||||||||| |||||||||||||| ||| |||| ||||||||||| |||||  |||| ||||||||||||||    ||    
gtatgagaccaatctaaagtttttcaacaaggaaattgagcacatgtgcaatatgtgtttctagtgctacaatgatactctgtacatattctttcatactgaaataattagtactaa-aataagttgcagtt--agccctgatgctcataagtgaccttatgactccattttgaaacagGACTGGTTTCTGGAGTGCAATGGCTTCCAATTTGACAAATCAATCACGTAATGTGTTCAGCAAAAAATTCATGGTCAACAAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124873096|gb|EH954741.1|EH954741
EST:     ATTGTCGCTGGAGTCTCTTTAGCATCTTTCACAGAAGCTTCTTTCAATTG                         GATTGGTTTCTGCAGTGCAATGGCTTCTAA
genomic: ATTGTCGCTGGAGTCTCTTTAGCATCTTTCACAGAAGCTTCTTTCAATTGgtatgaacaa ... gataaaccagGATTGGTTTCTGCAGTGCAATGGCTTCTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttgatgaagttttaattgatttgattaattcatggtattgggataaaccagGATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAG
                          gattaat  putative branch site (score: 3)
       atgaagttttaattga  TA-rich tract