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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTGAGCTTAGGAAGAGTAAATGTCTCTTTCACCCACACTATCAAAGCAATGGAGCCTTTCTTCACCGTCTTGCTTTCTGTTCTCTTGCTCGGTGAGgtaagcaaaacaaagatacgctctgtttcagacttaatctataaccttagattatacaagagagttatattttcagacataatctttgaaattttgattaatgtccag

Basic information

species Arabidopsis thaliana
transcript AT3G01550.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01550.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G00270.1 (Glycine max), 5'ss of exon 3
AAATGTGAGCTTAGGAAGAGTAAATGTCTCTTTCACCCACACTATCAAAGCAATGGAGCCTTTCTTCACCGTCTTGCTTTCTGTTCTCTTGCTCGGTGAGgtaagcaaaacaaagatacgctctgtttcagact--taatctataaccttagattatacaagagagttatattttcagacataatctttgaaattttgattaatgtccag
 ||  | ||  | || |  ||   ||| |||||||| ||||| |||||||| ||||||||||||||||| ||  | |||||||  || || || ||||||||||      |||   |   || | |||    ||  |||| | || | | | || ||  |  |   |||  ||||    |||||  |   ||| ||  ||  |       
CAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACAATCAAAGCTATGGAGCCTTTCTTCACTGTAGTTCTTTCTGCCCTTTTACTGGGTGAGgtaat--gttcaagtcttgactttattttttccttgtaatttgta-cataacataattaagtattattaatttttttctcataaattaaaaaacttgaataca-------