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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagagtttgaatataagttatccttatgatctcaagaaagaaactagtaatcgaaatctattaatgtttgtatattgaaacagGACGCTTTGGACAACATCAACCTTTTCTCTATAATAACCATTATCTCCTTTATCTTACTGGTTCCTTTAGCAATCCTCATCGATGGGTTCAAGGTTACTC

Basic information

species Arabidopsis thaliana
transcript AT3G01550.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084346|gb|DR380105.1|DR380105
EST:     TGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAG                         GACGCTTTGGACAACATCAACCTTTTCTCTATAATAACCATTATCYCCTTT
genomic: TGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAGgtaaaagagt ... attgaaacagGACGCTTTGGACAACATCAACCTTTTCTCTATAATAACCATTATCTCCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcaagaaagaaactagtaatcgaaatctattaatgtttgtatattgaaacagGACGCTTTGGACAACATCAACCTTTTCTCTATAATAACCATTATCTCCTTTATCTTACTGGTTCCTTTAGCAATCCTCATCGATGGGTTCAAGGTTACTC
                              tattaat  putative branch site (score: 2)
                         aaatctattaatgttt  TA-rich tract