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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTTCTCTATAATAACCATTATCTCCTTTATCTTACTGGTTCCTTTAGCAATCCTCATCGATGGGTTCAAGGTTACTCCTTCGCATTTACAAGTAGCAgtaagtggaaaagcataaaccgatatagctagatgatctaaaagagaaagaactaatgtgtgtttgtatgtggttgcttgacag

Basic information

species Arabidopsis thaliana
transcript AT3G01550.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084346|gb|DR380105.1|DR380105
EST:     CAAYCCYCATCGATGGGTTCAAGGTTACYCCTTCGCATTTACAAGTRGCA                         ACAAGCCAGGGTTTGYCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCT
genomic: CAATCCTCATCGATGGGTTCAAGGTTACTCCTTCGCATTTACAAGTAGCAgtaagtggaa ... tgcttgacagACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCT
EST: gi|125045785|gb|EL118054.1|EL118054
EST:     CAATCCTCATCGATGGGTTCAAGGTTACTCCTTCGCATTTACAAGTAGCA                         ACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCA
genomic: CAATCCTCATCGATGGGTTCAAGGTTACTCCTTCGCATTTACAAGTAGCAgtaagtggaa ... tgcttgacagACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCA
EST: gi|124835528|gb|EH919967.1|EH919967
EST:     ACTCCTTCGCATTTACAAGTAGCA                         ACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCT
genomic: ACTCCTTCGCATTTACAAGTAGCAgtaagtggaa ... tgcttgacagACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCT
EST: gi|125046585|gb|EL118854.1|EL118854
EST:     ATTTACAAGTAGCA                         ACAAGCCAGGGTTTGTCGGT-AAAGAGTTTTGCATCATGTCTCTACTTGCT
genomic: ATTTACAAGTAGCAgtaagtggaa ... tgcttgacagACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCT
EST: gi|47828631|gb|CK118315.1|CK118315
EST:     CAATCCTCATCGATGGGTTCAAGGTTACTCCTTCGCATTTACAAGTAGCA                         ACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCT
genomic: CAATCCTCATCGATGGGTTCAAGGTTACTCCTTCGCATTTACAAGTAGCAgtaagtggaa ... tgcttgacagACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCT
EST: gi|124873068|gb|EH954713.1|EH954713
EST:     ATTTACAAGTAGCA                         ACAAGCCAGGGTTTGTCGGTTAAAAGAGTTTTGCATCATGTCTCTACTTGC
genomic: ATTTACAAGTAGCAgtaagtggaa ... tgcttgacagACAAGCCAGGGTTTGTCGG-TAAAAGAGTTTTGCATCATGTCTCTACTTGC