1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaagtgattttccgcacattgtagtccatataggtcaaagagcgttctttgttttgctcacacacttgggttatcgaatattgaagacgtgtgtttcaatgttgcagGGTAGGTTGGTGCGAGGCATGTCATTTGTTCATGAGACGAGTCCATATAAGAGTCTTGAAGAACTCTGGGACGGTGAGATATGAGACTCAGCTGATTTGA
species | Arabidopsis thaliana |
transcript | AT2G37790.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTGGTCCATACCCGAAGACATGTTATCCAAGTTTTCTGAGATTGGACAG GGTAGGTTGGTGCGAGGCATGTCATTTGTTCAEST: gi|125068125|gb|EL134378.1|EL134378
genomic: ACTGGTCCATACCCGAAGACATGTTATCCAAGTTTTCTGAGATTGGACAGgcaagtgatt ... aatgttgcagGGTAGGTTGGTGCGAGGCATGTCATTTGTTCA
EST: CTGGTCCATACCCGAAGTACATGTTATCCAAGTTTTCTGAGATTGGACAG GGTAGGTTGGTGCGAGGCATGTCATTTGTTCAEST: gi|116453405|gb|EG495997.1|EG495997
genomic: CTGGTCCATACCCGAAG-ACATGTTATCCAAGTTTTCTGAGATTGGACAGgcaagtgatt ... aatgttgcagGGTAGGTTGGTGCGAGGCATGTCATTTGTTCA
EST: ACTGGTCCATACCCGAAGACATGTTATCCAAGTTTTCTGAGATTGGACAG GGTAGGTTGGTGCGAGGCATGTCGTTTGTTCATGAGACGAGTCCATATAAGEST: gi|86079594|gb|DR375351.1|DR375351
genomic: ACTGGTCCATACCCGAAGACATGTTATCCAAGTTTTCTGAGATTGGACAGgcaagtgatt ... aatgttgcagGGTAGGTTGGTGCGAGGCATGTCATTTGTTCATGAGACGAGTCCATATAAG
EST: ACTGGTCCATACCCGAAGACATGTTATCCAAGTTTTCTGAGATTGGACAG GGTAGGTTGGTGCGAGGCATGTCATTTGTTCATGAGACGAGTCCATATAAG
genomic: ACTGGTCCATACCCGAAGACATGTTATCCAAGTTTTCTGAGATTGGACAGgcaagtgatt ... aatgttgcagGGTAGGTTGGTGCGAGGCATGTCATTTGTTCATGAGACGAGTCCATATAAG
tttgctcacacacttgggttatcgaatattgaagacgtgtgtttcaatgttgcagGGTAGGTTGGTGCGAGGCATGTCATTTGTTCATGAGACGAGTCCATATAAGAGTCTTGAAGAACTCTGGGACGGTGAGATATGAGACTCAGCTGATTTGA
tgctcac putative branch site (score: 2)
aatattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgattttccgcacattgtagtccatataggtcaaagagcgttctttgttttgctcacacacttgggttatcgaatattgaagacgtgtgtttcaatgttgcagGGTAGGTTGGTGCGAGGCATGTCATTTGTTCATGAGACGAGTCCATATAAGAGTCTTGAAGAACTCTGGGACGGTGAGATATGAGACTCAGCTGATTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
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