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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccgtcttttgatttgcgatttattgtaacttgttagtgacgtatagctaaattgattctattctactacttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT2G37790.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041587|gb|DR337342.1|DR337342
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|86041590|gb|DR337345.1|DR337345
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|86041591|gb|DR337346.1|DR337346
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|86041583|gb|DR337338.1|DR337338
EST:     GCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTAGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGA
genomic: GCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCT-GTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGA
EST: gi|86041584|gb|DR337339.1|DR337339
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|86041588|gb|DR337343.1|DR337343
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|47828059|gb|CK117743.1|CK117743
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|19874496|gb|AU235327.1|AU235327
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|86041586|gb|DR337341.1|DR337341
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|86041589|gb|DR337344.1|DR337344
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
EST: gi|86057395|gb|DR353152.1|DR353152
EST:     GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAG                         ATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
genomic: GGCAGGCCGATCCTGGTCTCGTCGGAAACGCTGTCGACGCTGCTGTGAAGgttccgtctt ... cttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaacttgttagtgacgtatagctaaattgattctattctactacttaatgcagATTGGTTATCGTCACATTGATTGTGCTCAAATCTATGGCAATGAAAAAGAG
                        taaattgattctatt  TA-rich tract