1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaatatatttgaaaacgttgttttgtttgtctatgtgcttttctcttcagcataatatcaatccattttggtacttcagacttattgatgtggtt...
species | Arabidopsis thaliana |
transcript | AT2G37790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAGEST: gi|86041590|gb|DR337345.1|DR337345
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAG
EST: TTAATAGAACTCTACAGGATCTGCAKCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAEST: gi|86041591|gb|DR337346.1|DR337346
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTA
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGAKCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAGEST: gi|86041583|gb|DR337338.1|DR337338
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAG
EST: TNAATAGAACTCTACAGGATCTGCAGCTTGAMTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGEST: gi|86041584|gb|DR337339.1|DR337339
genomic: T-AATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAG
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAGEST: gi|86041588|gb|DR337343.1|DR337343
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAG
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAGEST: gi|47828059|gb|CK117743.1|CK117743
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAG
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAGEST: gi|19874496|gb|AU235327.1|AU235327
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAG
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCGGAGEST: gi|86041586|gb|DR337341.1|DR337341
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAG
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAGEST: gi|86041589|gb|DR337344.1|DR337344
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAG
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAGEST: gi|86057395|gb|DR353152.1|DR353152
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTTAAACCAGAG
EST: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTC ATTCACTGGCCTGTTAGCCTCAAGAAAGGRTCTACTGGCTTTTAAACCAGA
genomic: TTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaata ... tcttttgaagATTCACTGGCCTGTTAGCCTCAAGAAAGGATCTACTGGCTTT-AAACCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCTACAGGATCTGCAGCTTGACTACGTCGATCTGTATCTCgtaagtaatatatttgaaaacgttgttttgtttgtctatgtgcttttctcttcagcataatatcaatccattttggtacttcagacttattgatgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttctc