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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCGTGTTCCTCCCGCTGTTAACCAGGTGGAGTGTCACCCTTCATGGCAACAAAACGTGCTCAGGGATTTCTGCAAATCTAAAGGCGTTCATCTCTCAgtatgtagagcaaacatgtctatatcctttatgaaaaaactaacaaaagatctcggaaattaaacatgacttgatatttttttag

Basic information

species Arabidopsis thaliana
transcript AT2G37790.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124806617|gb|EH893348.1|EH893348
EST:     ATTTCTGCAAATCTAAAGGCGTTCATCTCTCA                         GGGTACTCTCCTTTGGGTTCTCCAGGAACAACGTGGCTAACGAGCGATGTT
genomic: ATTTCTGCAAATCTAAAGGCGTTCATCTCTCAgtatgtagag ... atttttttagGGGTACTCTCCTTTGGGTTCTCCAGGAACAACGTGGCTAACGAGCGATGTT
EST: gi|86079594|gb|DR375351.1|DR375351
EST:     AACAAAACGTGCTCAGGGATTTCTGCAAATCTAAAGGCGTTCATCTCTCA                         GGGTACTCTCCTTTGGGTTCTCCAGGAACAACGTGGCTAACGAGCGATGTT
genomic: AACAAAACGTGCTCAGGGATTTCTGCAAATCTAAAGGCGTTCATCTCTCAgtatgtagag ... atttttttagGGGTACTCTCCTTTGGGTTCTCCAGGAACAACGTGGCTAACGAGCGATGTT
EST: gi|124794763|gb|EH884442.1|EH884442
EST:     CTGCAAATCTAAAGGCGTTCATCTCTCA                         GGGTACTCTCCTTTGGGTTCTCCAGGAACAACGTGGCTAACGAGCGATGTT
genomic: CTGCAAATCTAAAGGCGTTCATCTCTCAgtatgtagag ... atttttttagGGGTACTCTCCTTTGGGTTCTCCAGGAACAACGTGGCTAACGAGCGATGTT