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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGGTTAGTCCTGAAGAAATTGTTTGATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgcatcactatggtttaaatgctttaatagtttttttttaatcagttgtcaagtctatgtagcttctaacctggttacttgttcatatgaaag

Basic information

species Arabidopsis thaliana
transcript AT2G37790.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041587|gb|DR337342.1|DR337342
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
EST: gi|86041590|gb|DR337345.1|DR337345
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
EST: gi|124983012|gb|EL055773.1|EL055773
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTG
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTG
EST: gi|86041591|gb|DR337346.1|DR337346
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCGTCAAGAAGTGCCTGAGGCACTTAATAGAACTC
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCC-TCAAGAAGTGCCTGAGGCACTTAATAGAACTC
EST: gi|86041583|gb|DR337338.1|DR337338
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCM-TTNAATAGAACTC
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTT-AATAGAACTC
EST: gi|86041584|gb|DR337339.1|DR337339
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCM-TTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
EST: gi|86041588|gb|DR337343.1|DR337343
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCAMTTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
EST: gi|47828059|gb|CK117743.1|CK117743
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
EST: gi|19874496|gb|AU235327.1|AU235327
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
EST: gi|86041586|gb|DR337341.1|DR337341
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
EST: gi|86041589|gb|DR337344.1|DR337344
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
EST: gi|86057395|gb|DR353152.1|DR353152
EST:     GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATG                         GTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT
genomic: GATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgca ... catatgaaagGTGTACTTATCATGATCCTCAAGAAGTGCCTGAGGCACTTAATAGAACTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGGGTTAGTCCTGAAGAAATTGTTTGATGGTGGAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTATGgtattctgcatcactatggtttaaatgctttaatagtttttttttaatcagttgtcaagtctatgtagcttctaacctggttacttgttcatatgaaag

- - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - -  GTGGAG