Sequence
atgc intronic sequence ATGC exonic sequenceAAGAGCAAAAAGCAAAATTCTTAAGATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGTGAAGATCTGGGCAAACAAGCTCAAATGATGACTGAGgtatgtattatcctctgatatatgagggattccgcgatttttcgtatgtctcttagtcatatatttctatgcatttcttttatttgtacaacttttagct...
Basic information
species | Arabidopsis thaliana |
transcript | AT2G21410.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G21410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 7
AAGAGCAAAAAGCAAAATTCTTAAGATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGTGAAGATCTGGGCAAACAAGCTCAAATGATGACTGAGgtatgtattatcctctgatatatgagggattccgcgatttttcgtatgtctcttagtcatatatttctatgcatttcttttatttgtacaacttttagct-----
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AAGAGTTAAAAGCAAAATTCTGAAAATATGTGATGCTTTTGGAGCAAATCGTTATCCTTTCTCAGATGACTTGAGTAAACAATTTCAGACGATAAGGGAGgtatacgtaatttttcctttta---ggttcttgattagctttaagttgttgttaagcgctaaatgcttcaga--ttgctgcatcttgagaatttcttgtcgaata
upper sequence: AT2G21410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv03s0038g00290.t01 (Vitis vinifera), 5'ss of exon 7
AAGAGCAAAAAGCAAAATTCTTAAGATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGTGAAGATCTGGGCAAACAAGCTCAAATGATGACTGAGgtatgtattatcctctgatatatgagggattccgcgatttttcgtatg---tctcttagtcatatatttctatgcatttcttttatttgt-acaacttttagct
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AAAAGTGAAGAACAAAATTCTTAAGATATGTGAAGCTTTTGGAGCAAATCGCTACTCTTTTCCTGAAGACCTTGGAAAACAAGCTCAAATGATCACTGAGgtatgcattattcttt--tggttgaactttctgaccatcatctctatgatttcttttgggaagctttgaccatactgcaacttgatttctcattaattttgc--
upper sequence: AT2G21410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S60_200V6.1 (Physcomitrella patens), 5'ss of exon 6
AAGAGCAAAAAGCAAAATTCTTAAGATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGTGAAGATCTGGGCAAACAAGCTCAAATGATGACTGAGgta-tgtattatcctctgatatatgagggattccgcgatttttcgtatgtctcttagtcatatatttcta-----tgcatttcttttatttgtacaacttttagct
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GCGTGCCAAATCCAAGGTTGTCAAAATCTGTGAGGCTTTTGGGGCCAATCGCTATCCCTTCCCTGAGGACCCAAACAAGCAGTGGCAGATGAAGTCTGAGgtactaaattataagct-atgaatgtgtg-ttttgtgataattcaattaaggatttctcgtgaaataccaaatcctgcagttcatctattt-tccctttttta---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116483494|gb|EG526086.1|EG526086EST: GCTATCCTTTCAGTGAAGATCTGGGCAAACAAGCTCAAATGATGACTGAG GTTTCAGGTCGGTTATCAGAGCTTAAAACTACCATAGGTGCTGGGTTGGAT
genomic: GCTATCCTTTCAGTGAAGATCTGGGCAAACAAGCTCAAATGATGACTGAGgtatgtatta ... aatgtatcagGTTTCAGGTCGGTTATCAGAGCTTAAAACTACCATAGGTGCTGGGTTGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAGCAAAAAGCAAAATTCTTAAGATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGTGAAGATCTGGGCAAACAAGCTCAAATGATGACTGAGgtatgtattatcctctgatatatgagggattccgcgatttttcgtatgtctcttagtcatatatttctatgcatttcttttatttgtacaacttttagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA