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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaacttgttctcaaacccctttaaaggaatgcattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT

Basic information

species Arabidopsis thaliana
transcript AT2G21410.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os10g10500.1 (Oryza sativa), 3'ss of exon 12
gtatgtcaacttgttctcaaacccctttaaaggaatgcattaaaggaatatctttaag--attctgagtttctgtcttctgct-ctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
                | |    | ||| ||    |   ||  |    |   || | |   |||| |  ||   | ||||||   | || |  || || |||||||||   ||  | || ||     |     | ||| | ||||| || |||||||| |||||||||| |||||||||||| || || || || 
---------------gtaaggagcttttgaactgctaatttgcaaaccttatttgatgcctttctaaaatttaatgttctgccattgttttatagAGATGCTACTACAGAAGGATTAATTAAGGTGAGGCCAGCATATTCGTTTGGCGTCGATCCTGTATGGCATGGTAGCCGCAGTGAGCTGCCTTTTCTTAAC

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G058910_T01 (Zea mays), 3'ss of exon 12
gtatgtcaacttgttctcaaacccctttaaaggaatgcattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgtt-cagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
||| |  || | |   | ||    | | |     ||  ||| |   ||| |    |    ||||  |   |   |||  | || | ||   ||||| ||||||||    || ||  | |||    ||||  | || || ||||||||||| ||||| |||||||||| ||||||||||||||| || || || 
gtaaggaaaat-gagataaagaagcctaatgtttatatatttata-aatttgcacacttatctggctcattaatttccacactttggtcatagTGATGCTACTACCGAAGGACTTCTTAAAGTAAGAGATGCATACCCTTTTGGTGTGGACCCTGTCTGGCATGGTAGCCGCAGTGAGCTACCGTTTCTCAAC

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G104418_T01 (Zea mays), 3'ss of exon 3
gtatgtcaacttgttctcaaacccctttaaaggaatgcattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
||| |  || |       |||      ||     ||  ||| |  |||  |    |    ||||  |   |   |||  | ||  |    ||||| ||||||||    || || || ||     ||||  | || || ||||||||||| ||||| |||||||||| |||||| ||||| || || || |||
gtaaggaaaatgaaat--aaataaacctatgcttatttatttatagaac-tgcacatttatctggctcattaatttccccacttgttcatagTGATGCTACTACTGAAGGACTAATTAAGGTAAGAGATGCATACCCTTTTGGTGTGGACCCTGTTTGGCATGGTAGCCGCAGCGAGCTGCCGTTTCTCAAT

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA12G04330.1 (Glycine max), 3'ss of exon 12
-----------------------gtatgtcaacttgttctcaaacccctttaaaggaatgcattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgtt-cagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
                         || | |  |||| ||  |     ||||||    |   | |  |   | ||| |    || |   ||| ||| | || |  | ||| | ||| || ||||| ||| | || ||||| |||   || ||||||||||| ||||| ||||||||||||||||| || || || ||||| |||||||||||||| 
gtaaattaaacccttgattggtaacatttaatattgtacttta-tgtatttaaaaatcta-gtcactgtcttttctgtttttttttttttttttgtatacttcctttttgatgcagGGATGCTACAACAGTGGGCCTGATAAAAGTGCGTGACACTTATCCTTTTGGAGTGGATCCTGTGTGGCACGGCACACGAAGTGAACTACCATTCCTAAAC

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA11G12120.1 (Glycine max), 3'ss of exon 12
----------------gtatgtcaac--ttgttctcaaacccctttaaaggaatgcattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
                |  ||  |||  || || ||   |    |      ||   ||| |   |  ||||||    || |   ||| ||| | ||    | |  | ||| || ||||| ||| | || ||||| |||   || ||||||||||| || || ||||||||||| |||||||| || || ||||| |||||||||||||| 
gtaaattaaaccccttgattggtaacatttattatcgtgctttatgcttttaaaa-atttagtcaccatcttttctgttttt--tttttgtatactttcttttcatgcagGGATGCTACAACAGTGGGCCTGATAAAAGTGCGTGACACTTATCCTTTCGGAGTGGATCCTGTATGGCATGGCACACGAAGTGAACTACCATTCCTAAAC

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA06G03040.1 (Glycine max), 3'ss of exon 12
-------gtatgtcaacttgttct-caaacccctttaaaggaatgcattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
        ||   ||| || |||  || |   ||||       |  |||||  ||||    ||||  |     || | ||| |  |  ||  |  | ||| || ||| ||||||  ||| | || |||   ||   |||||||||||||||||||||||||   |||||||| || || ||||| || ||||| || |||
gtggttattagtacaatttattcaacagattacttttctct--tctattaattgaattgacttaaatt-----gtgtgtgtgtaatattcattattacagGGATGCTTCTACAACAGGTTTTATAAAAGTGCGTAGCACTTATCCATTTGGTGTGGATCCTAAATGGCATGGAACTCGGAGTGAACTTCCATTTCTTAAT

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv03s0038g00290.t01 (Vitis vinifera), 3'ss of exon 12
--gtatgtcaacttgttc-tcaaacccctttaaaggaatgcattaaaggaatat-ctttaagattctgagtttc-tgtcttctgctctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
   | || |||     |  | | | |   ||  |    |      |    | || || | | ||||     ||  | |  |     ||||| | ||| || ||| | |||   ||  | || ||    ||   |||||| |||||||||||||| ||||| ||||||||| ||||||| || || |||||||| || 
gtatttgacaaaaccctagttacatcatattggatttttttgcctattatacattctcttaaattccattcttagtattcttcatactcttttgcagGGATGCTTCAACAGCGGGCTTAATTAAGGTGCGTCGCACTTACCCATTTGGTGTGGACCCTGTATGGCATGGTTCCCGCAGCGAACTGCCATTCCTCAAC

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 3'ss of exon 12
gtatgtcaacttgttctcaaacccctttaaaggaatgcattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
||    |||    ||   |||    ||        |   ||      |  | |||     | | | || |  ||   |  | |||  | ||| |  ||| ||| | | ||  |||| |     ||   |||||||||||||||||||||||||  |||||||||| | ||||||||| | ||||| || || 
gtcaaacaagcacttaagaaaattgttatgccaccttttttcctcccaactatttg----tattacttacactcactttttttctgttccagGGGTGCTTCTATAGTGGGCTTGATTAGGGTGCGCCCCACTTATCCATTTGGTGTGGATCCTAAGTGGCATGGTTCTCGCAGTGAGTTGCCATTTCTTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattaaaggaatatctttaagattctgagtttctgtcttctgctctcttgttcagTGAGGCTACTACAATTGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACCCGCAGTGAGCTACCATTCCTAAAT
                             tttctgtcttctgctc  CT-rich tract
         aatatctttaagatt  TA-rich tract