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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGAACCGATGCAACTCGTTCAAGTCATTGTTCCCATGGAATCTGCTCATCTTACCGTCTCTTATCTCGGCGATCTCGGTCTCGTCCAGTTCAAAGATgtacgtatagagtttactctctccatgatcgtctctctcgagtgttaagttttattgtattgcgattgcattagaggatatctttagtgaatgttgaactagtttagttgttcttcttatatcggctatttttgatgttcatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G21410.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21410.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os10g10500.1 (Oryza sativa), 5'ss of exon 1
GTCAGAACCGATGCAACTCGTTCAAGTCATTGTTCCCATGGAATCTGCTCATCTTACCGTCTCTTATCTCGGCGATCTCGGTCTCGTCCAGTTCAAAGATgtacgtatagagtttactctctccatgatcgtctctctcgagtgttaagttttattgtattgcgattgcattagaggatatctttagtgaatgttgaactagtttagttgttcttcttatatcggctatttttgatgttcatttcag
||| ||  ||||||| || || || |||||  | ||   ||| || || || ||  ||||||| || |||||||| ||||| ||| ||||||||||||| ||||| |  |   |  ||| |||   | |||   || ||||   ||  | |  ||| |  ||||  |    | || | | | |||   ||  |  |   | |   | |||||                                   
GTCGGAGGCGATGCAGCTGGTGCAGGTCATCATCCCGGCGGAGTCCGCGCACCTCGCCGTCTCCTACCTCGGCGACCTCGGCCTCCTCCAGTTCAAAGACgtacgcaccg--ctcgctcgctc---gctcg---ctttcga---tttcgatccatttt--tgcgcct---ctggacggtgtgtttctcgatcgagggggtgggggatttgttaggg-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483493|gb|EG526085.1|EG526085
EST:     ATCTTACCGTCTCTTATCTCGGCGATCTCGGTCTCGTCCAGTTCAAAGAT                         CTTAATTCTGAGAAGAGCCCATTTCAAAGGACTTATGCTGCTCAG
genomic: ATCTTACCGTCTCTTATCTCGGCGATCTCGGTCTCGTCCAGTTCAAAGATgtacgtatag ... ttcatttcagCTTAATTCTGAGAAGAGCCCATTTCAAAGGACTTATGCTGCTCAG
EST: gi|116466550|gb|EG509142.1|EG509142
EST:     ATCTTACCGTCTCTTATCTCGGCGATCTCGGTCTCGTCCAGTTCAAAGAT                         CTTAATTCTGAGAAGAGCCCATTTCAAAGGACTTATGCTGCTCAG
genomic: ATCTTACCGTCTCTTATCTCGGCGATCTCGGTCTCGTCCAGTTCAAAGATgtacgtatag ... ttcatttcagCTTAATTCTGAGAAGAGCCCATTTCAAAGGACTTATGCTGCTCAG