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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacccctaattgacagcatctattttccgactgagcacagtataagattggtttctgtttcagaaaaagttgtgtgcaaatttcaaattcaagaaaattattttgagagttgttactttgattggtcatcaatgtttgtctttcttgcaagttctagatgctaaaccatcaatccttgcttcgtgacaacagAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTCACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCT

Basic information

species Arabidopsis thaliana
transcript AT2G21410.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: LOC_Os10g10500.1 (Oryza sativa), 3'ss of exon 11
gtaatacccctaattgacagcatctattttccgactgagcacagtataagattggtttctgtttcagaaaaagttgtgtgcaaatttcaaattcaagaaaattattttgagagttgttactttg-attggtcatcaatgtttgtctttcttgcaagttctagatgctaaaccatcaatccttgcttcgtgacaacagAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTCACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCT
                                                                                           | |||||| |   |     |     ||| |||   |  ||  |  |||  |   | || || || ||  || | ||||      ||   |   || |      |||||||| |  ||||| ||||| |||   |||||||| || ||||| ||||| ||||||||||| || ||||| |||||||| || || |||||||| || |
------------------------------------------------------------------------------------------ctacaagaagacattccattgctcctttattttctgtcagttttggatgcatacgtatcctggaactt--agtttctaa-----taactttgaatttggctttccagAAACTGGATGATATAATGGATATGATGTTTGGTGGTCGCTACGTGATTTTGATGATGTCACTCTTTTCAATTTACACTGGGTTGATATACAACGAATTTT

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv03s0038g00290.t01 (Vitis vinifera), 3'ss of exon 11
gtaatacccctaattgacagcatctattttccgactgagcacagtataagattggtttctgtttcagaaaaagttgtgtgcaaatttcaaattcaagaaaattattttgagagttgttactttgattggtcatcaatgtttgtctttcttgcaagttctagatgctaaaccatcaatccttgcttcgtgacaacagAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTCACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCT
                                                                                            ||     | || |  |     || | |   |||||   | |  | |||    | ||||   | |   |||  ||||    |||  || | ||     || |||||| || || || || |  |||||| | |||||||||||||| |||||  | |||||| |||| |||||||| || |||||||| || || || |||||||
-------------------------------------------------------------------------------------------ctcctattagttgtcattttttttttcagcatgattt-cctttgaagttctcttatctt--taatatcagaaactaatttctca--ccattctattaaactacagAAGCTCGGAGACATCACAGAAATGACCTTTGGTGGCCGTTATGTTATACTGATGATGGCACTCTTCTCAATTTATACTGGTTTGATTTATAATGAGTTCT

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 3'ss of exon 11
gtaatacccctaattgacagcatctattttccgactgagcacagtataagattggtttctgtttcagaaaaagttgtgtgcaaatttcaaattcaagaaaattattttgagagttgttactttgattggtcatcaatgtttgtctttcttgcaagttctagatgctaaaccatcaatccttgcttcgtgacaacagAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTCACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCT
                                                                                         | |||     |   ||||||||  |  |  ||||  ||  | | |||| |||   |||  ||   | ||||   | | | |  | | |   |  ||  ||||  |||||||| || || || ||||| ||| |||||||||| ||||| || ||| | |||||| |||| |||||||||||||| || || || || || || ||||
-----------------------------------------------------------------------------------------atttccttgta--cattttgag--tcttagctttacttcttaaccaat-tttcagtttgatggttgatctattagttcagc--ttacttgatttttgttgactgcagAAACTAGGAGACATCATGGAGATGACTTTTGGTGGGCGTTATGTGATTATGATGATGGCACTGTTCTCAATATACACAGGATTGATATATAATGAATTCT

upper sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: PP1S6_159V6.1 (Physcomitrella patens), 3'ss of exon 10
gtaatacccctaattgacagcatctattttccgactgagcacagtataagattggtttctgt--ttcagaaaaagttgtgtgcaaatttcaaattcaagaaaattattttgagagttgttactttgattggtcatcaatgtttgtctttcttgcaagttctagatgctaaaccatcaatccttgcttcgtgacaacagAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTCACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCT
               |      |||       |   |||     |  |   ||| ||  |||  ||  | | ||||| ||||     ||  |     || |   || ||  | |  | |  |    | |||      |  || || |      |||||  ||   | ||||| |  |    |||   | |     |||||||| || ||||||||||| ||||||| ||| || ||||| || ||| || ||||| |  | ||||| || ||||||||||| || ||||| |||||||
---------------gtacatttctggagcatggaagagtcttttgaacagttgattcttgtggttttgtagaagtt-tgtgtgcgcttacagcatgagcactgtagttcaaaa-ctatcgccggaactgg------agattcgttt------caagtcgtatg-gttaaactaata----ttgtgacattgttgcagAAACTCGGTGATATTATGGAGATGGCTTATGGAGGTCGTTATGTAATTCTTTTGATGGCTATTTTCTCCATCTACACTGGTTTCATATACAATGAGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttcttgcaagttctagatgctaaaccatcaatccttgcttcgtgacaacagAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTCACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCT
                     tgctaaa  putative branch site (score: 2)