1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgagaggaggtgcctgcttttgattttgggacattcattatgcttcccgtttcttcaatgcttatatttttcttctttctcccttttcagGTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAACGACAAGTTGCAGCGGTCTTATAATGAACTTGTGGAGTACAAGCTCGTTC
species | Arabidopsis thaliana |
transcript | AT2G21410.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATATTGATTTGGATGATGTAGAG GTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAACEST: gi|116483493|gb|EG526085.1|EG526085
genomic: GATATTGATTTGGATGATGTAGAGgtgagaggag ... cccttttcagGTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAAC
EST: CCAAAGAGACCCTAGATAGAGAAAATGATATTGATTTGGATGATGTAGAG GTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAACEST: gi|116466550|gb|EG509142.1|EG509142
genomic: CCAAAGAGACCCTAGATAGAGAAAATGATATTGATTTGGATGATGTAGAGgtgagaggag ... cccttttcagGTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAAC
EST: CCAAAGAGACCCTAGATAGAGAAAATGATATTGATTTGGATGATGTAGGG GTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAAC
genomic: CCAAAGAGACCCTAGATAGAGAAAATGATATTGATTTGGATGATGTAGAGgtgagaggag ... cccttttcagGTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAAC
cattatgcttcccgtttcttcaatgcttatatttttcttctttctcccttttcagGTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAACGACAAGTTGCAGCGGTCTTATAATGAACTTGTGGAGTACAAGCTCGTTC
tttcttcaatgcttat CT-rich tract
ttatatttttcttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaggaggtgcctgcttttgattttgggacattcattatgcttcccgtttcttcaatgcttatatttttcttctttctcccttttcagGTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTTGAAATCAATGCTAATAACGACAAGTTGCAGCGGTCTTATAATGAACTTGTGGAGTACAAGCTCGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT