1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatcctcccttcacatcattcggaccaaaacttttgtaactacattgtgggtatctgaacttatcacatatgatgttgtttcagGGCTGGGGTGTTGCAGTGCTGGTGGGTGTGCCAAGCAAAGACGATGCCTTCAAGACTCATCCGATGAATTTCTTGAATGAGAGGACTCTTAAGGGTACTT
species | Arabidopsis thaliana |
transcript | AT1G77120.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTGTCCACGAT GGCTGGGGTGTTGCAGTGTTGGTGGGTGTGCCAAGCAAAGACGATGCCTTCEST: gi|116397680|gb|EG440272.1|EG440272
genomic: ATGTGTCCACGATgtaatcctcc ... gttgtttcagGGCTGGGGTGTTGCAGTGCTGGTGGGTGTGCCAAGCAAAGACGATGCCTTC
EST: ATGTGTCCACGAT GGCTGGGGTGTTGCAGTGCTGGTGGGTGTGCCAAGCAAAGACGATGCCTTC
genomic: ATGTGTCCACGATgtaatcctcc ... gttgtttcagGGCTGGGGTGTTGCAGTGCTGGTGGGTGTGCCAAGCAAAGACGATGCCTTC
acttttgtaactacattgtgggtatctgaacttatcacatatgatgttgtttcagGGCTGGGGTGTTGCAGTGCTGGTGGGTGTGCCAAGCAAAGACGATGCCTTCAAGACTCATCCGATGAATTTCTTGAATGAGAGGACTCTTAAGGGTACTT
ttgtaac putative branch site (score: 2)
ttgtttc putative PPT
aacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcctcccttcacatcattcggaccaaaacttttgtaactacattgtgggtatctgaacttatcacatatgatgttgtttcagGGCTGGGGTGTTGCAGTGCTGGTGGGTGTGCCAAGCAAAGACGATGCCTTCAAGACTCATCCGATGAATTTCTTGAATGAGAGGACTCTTAAGGGTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA