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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTCTTACATCACAATCACACAAAACTAACAAAAGATCAAAAGCAAGTTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttttattctgtctttttccaaatatttattgatcggttacatttctgttgaggtttttgttatgaatccacaatttctatgttgaattaacaaaacctgtgtcgtttttttgtggtggttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G77120.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152034897|gb|BP839260.2|BP839260
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116438330|gb|EG480922.1|EG480922
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116416235|gb|EG458827.1|EG458827
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116439251|gb|EG481843.1|EG481843
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116406690|gb|EG449282.1|EG449282
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116406691|gb|EG449283.1|EG449283
EST:     GTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: GTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116406709|gb|EG449301.1|EG449301
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116406705|gb|EG449297.1|EG449297
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTTTCTTACATCACAATCACACAAAACTAACAAAAGATCAAAAGCAAGTTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttttattctgtctttttccaaatatttattgatcggttacatttctgttgaggtttttgttatgaatccacaatttctatgttgaattaacaaaacctgtgtcgtttttttgtggtggttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG