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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaacactaatcttctttgcttcgttttggatatttttaaggttttagagattcaaggtcgttttttttgttgttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G77120.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406708|gb|EG449300.1|EG449300
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|152034897|gb|BP839260.2|BP839260
EST:     GGAAAAACACCGTTGTT-CCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGAGTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|116438330|gb|EG480922.1|EG480922
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|116416235|gb|EG458827.1|EG458827
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|116439251|gb|EG481843.1|EG481843
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|116406690|gb|EG449282.1|EG449282
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|116406691|gb|EG449283.1|EG449283
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|116406709|gb|EG449301.1|EG449301
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCGGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|116406705|gb|EG449297.1|EG449297
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
EST: gi|116406711|gb|EG449303.1|EG449303
EST:     GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGG                         GATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA
genomic: GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaa ... tgttgtgtagGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGgtaatagaaacactaatcttctttgcttcgttttggatatttttaaggttttagagattcaaggtcgttttttttgttgttgtgtag

- - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - -  TGGAGG