1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattcaaaaagatgatagtctgtttttgactatgttcttctataatctcccttcacttacattgaatttgatatgttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGCCAATTCAACAGGTGATCGCTGAGATGACGGATGGTGGGGTGGACAGGAG
species | Arabidopsis thaliana |
transcript | AT1G77120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGAEST: gi|116416235|gb|EG458827.1|EG458827
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
EST: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGCEST: gi|116406690|gb|EG449282.1|EG449282
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGC
EST: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGAEST: gi|116406691|gb|EG449283.1|EG449283
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
EST: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGAEST: gi|116406709|gb|EG449301.1|EG449301
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
EST: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGAEST: gi|116406711|gb|EG449303.1|EG449303
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
EST: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
tatgttcttctataatctcccttcacttacattgaatttgatatgttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGCCAATTCAACAGGTGATCGCTGAGATGACGGATGGTGGGGTGGACAGGAG
aatttgatatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcaaaaagatgatagtctgtttttgactatgttcttctataatctcccttcacttacattgaatttgatatgttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGCCAATTCAACAGGTGATCGCTGAGATGACGGATGGTGGGGTGGACAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA