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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctttttattctgtctttttccaaatatttattgatcggttacatttctgttgaggtttttgttatgaatccacaatttctatgttgaattaacaaaacctgtgtcgtttttttgtggtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGGTTGCTCCACCGCAGAAACACGAAGTTCGTATCAAGATTCTCTTCACTTC

Basic information

species Arabidopsis thaliana
transcript AT1G77120.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152034897|gb|BP839260.2|BP839260
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116438330|gb|EG480922.1|EG480922
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116416235|gb|EG458827.1|EG458827
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116439251|gb|EG481843.1|EG481843
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116406690|gb|EG449282.1|EG449282
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116406691|gb|EG449283.1|EG449283
EST:     GTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: GTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116406709|gb|EG449301.1|EG449301
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
EST: gi|116406705|gb|EG449297.1|EG449297
EST:     TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAG                         CTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG
genomic: TTCTTCACTGTTGATAATGTCTACCACCGGACAGATTATTCGATGCAAAGgttttctttt ... gtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatttctatgttgaattaacaaaacctgtgtcgtttttttgtggtggttgcagCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGGTTGCTCCACCGCAGAAACACGAAGTTCGTATCAAGATTCTCTTCACTTC
               aattaac  putative branch site (score: 2)
            ttgaattaacaaaa  TA-rich tract