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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTGGTGCTGTTGGTTTAGGCGCTGCAGAAGGTGCTAGAATCGCTGGTGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaaagatgatagtctgtttttgactatgttcttctataatctcccttcacttacattgaatttgatatgttattggcag

Basic information

species Arabidopsis thaliana
transcript AT1G77120.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406708|gb|EG449300.1|EG449300
EST:     TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG                         CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
EST: gi|116416235|gb|EG458827.1|EG458827
EST:     TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG                         CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGC
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGC
EST: gi|116406690|gb|EG449282.1|EG449282
EST:     TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG                         CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
EST: gi|116406691|gb|EG449283.1|EG449283
EST:     TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG                         CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
EST: gi|116406709|gb|EG449301.1|EG449301
EST:     TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG                         CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
EST: gi|116406711|gb|EG449303.1|EG449303
EST:     TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAG                         CTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA
genomic: TGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGgtattcaaaa ... ttattggcagCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGA